5MOR

Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine


Experimental Data Snapshot

  • Method: NEUTRON DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.196 

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.108 
  • R-Value Work: 0.100 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine

Schiebel, J.Heine, A.Klebe, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cationic trypsin
A
223Bos taurusMutation(s): 0 
EC: 3.4.21.4
Find proteins for P00760 (Bos taurus)
Go to UniProtKB:  P00760
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UFZ
Query on UFZ

Download SDF File 
Download CCD File 
A
(phenylmethyl)azanium
C7 H10 N
WGQKYBSKWIADBV-UHFFFAOYSA-O
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
DOD
Query on DOD

Download SDF File 
Download CCD File 
A
DEUTERATED WATER
D2 O
XLYOFNOQVPJJNP-ZSJDYOACSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: NEUTRON DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.196 
  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.108 
  • R-Value Work: 0.100 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 54.841α = 90.00
b = 58.334β = 90.00
c = 67.781γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data scaling
Cootmodel building
PHENIXrefinement
HKL-2000data reduction
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council268145-DrugProfilBind

Revision History 

  • Version 1.0: 2018-02-28
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection