5MNP

Cationic trypsin in complex with N-amidinopiperidine (at 295 K)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.01 Å
  • R-Value Free: 0.102 
  • R-Value Work: 0.089 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cationic trypsin in complex with N-amidinopiperidine (at 295 K)

Schiebel, J.Heine, A.Klebe, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cationic trypsin
A
223Bos taurusMutation(s): 0 
EC: 3.4.21.4
Find proteins for P00760 (Bos taurus)
Go to UniProtKB:  P00760
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MRZ
Query on MRZ

Download SDF File 
Download CCD File 
A
piperidine-1-carboximidamide
C6 H13 N3
QUUYRYYUKNNNNS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.01 Å
  • R-Value Free: 0.102 
  • R-Value Work: 0.089 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 54.921α = 90.00
b = 58.623β = 90.00
c = 67.731γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
PHASERphasing
XDSdata reduction
XDSdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council268145-DrugProfilBind

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release