5MKI

Crystal structure of SmAP (LSm) protein from Methanococcus vannielii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.048 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of SmAP (LSm) protein from Methanococcus vannielii

Nikulin, A.D.Lekontseva, N.V.Tishchenko, S.V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Like-Sm ribonucleoprotein core
A, B, C, D, E, F, G, H, I, J, K, L, M, N
72Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)Mutation(s): 0 
Find proteins for A6UPF5 (Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB))
Go to UniProtKB:  A6UPF5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download SDF File 
Download CCD File 
M
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
C, D, E, F, G, I, J, K, L, M
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.048 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.191 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 69.671α = 90.00
b = 114.221β = 113.70
c = 71.993γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Scientific FoundationRussian Federation14-14-00496

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release