5MI3

Structure of phosphorylated translation elongation factor EF-Tu from E. coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Phosphorylation decelerates conformational dynamics in bacterial translation elongation factors.

Talavera, A.Hendrix, J.Versees, W.Jurenas, D.Van Nerom, K.Vandenberk, N.Singh, R.K.Konijnenberg, A.De Gieter, S.Castro-Roa, D.Barth, A.De Greve, H.Sobott, F.Hofkens, J.Zenkin, N.Loris, R.Garcia-Pino, A.

(2018) Sci Adv 4: eaap9714-eaap9714


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Elongation factor Tu 1
A, B
402Escherichia coli O9:H4 (strain HS)Mutation(s): 0 
Gene Names: tuf1
Find proteins for A8A5E6 (Escherichia coli O9:H4 (strain HS))
Go to UniProtKB:  A8A5E6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A, B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
TPO
Query on TPO
A, B
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.153 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 68.200α = 90.00
b = 244.400β = 90.00
c = 61.740γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
FNRSBelgiumMIS F.4505.16

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release
  • Version 1.1: 2018-04-25
    Type: Data collection, Database references, Source and taxonomy, Structure summary