Macromolecule Content

Total Structure Weight: 171.42 kDa
Atom Count: 11313
Residue Count: 1407
Unique protein chains: 2

5MHL

FXIIIa in complex with the inhibitor Mi0621

DOI: 10.2210/pdb5MHL/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens, synthetic construct
Expression System: Spodoptera frugiperda
Mutation(s): Yes

Deposited: 2016-11-24 Released: 2017-12-20
Deposition Author(s): Stieler, M., Heine, A., Klebe, G.
Funding Organization(s): BMBF

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.231
R-Value Work: 0.172
R-Value Observed: 0.175

wwPDB Validation 3D Report Full Report

Literature

FXIIIa in complex with the inhibitor Mi0621

Stieler, M., Heine, A., Klebe, G.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Coagulation factor XIII A chain	A, B	738	Homo sapiens	Mutation(s): 2 Gene Names: F13A1, F13A EC: 2.3.2.13
Find proteins for P00488 (Homo sapiens) Explore P00488 Go to UniProtKB: P00488
NIH Common Fund Data Resources
PHAROS: P00488 GTEx: ENSG00000124491
Protein Feature View Expand
Reference Sequence

Find similar proteins by: Sequence | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
inhibitor Mi0621	K, O	9	synthetic construct	Mutation(s): 0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain L [A] SDF format, chain M [A] SDF format, chain R [B] SDF format, chain S [B] MOL2 format, chain L [A] MOL2 format, chain M [A] MOL2 format, chain R [B] MOL2 format, chain S [B]	A, B	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain H [A] SDF format, chain I [A] SDF format, chain J [A] SDF format, chain P [B] SDF format, chain Q [B] MOL2 format, chain H [A] MOL2 format, chain I [A] MOL2 format, chain J [A] MOL2 format, chain P [B] MOL2 format, chain Q [B]	A, B	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain K [A] MOL2 format, chain K [A]	A	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [A] SDF format, chain G [A] SDF format, chain N [B] SDF format, chain O [B] SDF format, chain T [B] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain G [A] MOL2 format, chain N [B] MOL2 format, chain O [B] MOL2 format, chain T [B]	A, B	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.231
R-Value Work: 0.172
R-Value Observed: 0.175
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.213	α = 88.12
b = 80.993	β = 76.87
c = 103.329	γ = 81.47

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
Coot	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2016-11-24
Released Date: 2017-12-20

Deposition Author(s):

Funding Organization	Location	Grant Number
BMBF	Germany	FKZ0316030

Revision History

Version 1.0: 2017-12-20
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.