5MGS

Human receptor NKR-P1 in deglycosylated form, extracellular domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of human NKR-P1:LLT1 receptor complex

Blaha, J.Skalova, T.Vanek, O.Stransky, J.Koval, T.Hasek, J.Yuguang, Z.Harlos, K.Dohnalek, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Killer cell lectin-like receptor subfamily B member 1
A, B, C, D, E, F, G, H
146Homo sapiensMutation(s): 0 
Gene Names: KLRB1 (CLEC5B, NKRP1A)
Find proteins for Q12918 (Homo sapiens)
Go to Gene View: KLRB1
Go to UniProtKB:  Q12918
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.157 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 44.806α = 101.88
b = 68.404β = 100.72
c = 101.564γ = 100.64
Software Package:
Software NamePurpose
PHASERphasing
Aimlessdata scaling
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Czech Science FoundationCzech Republic15-15181S
Ministry of Education, Youth and Sports of the Czech RepublicCzech RepublicLG14009

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release