5MFX

Zika NS3 helicase:RNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.598 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

How Zika virus NS3 helicase grips the first nucleotide of the leading RNA strand

Jenkins, H.T.Ge, M.Chechik, M.Greive, S.J.Antson, A.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
A
451Zika virusMutation(s): 0 
Find proteins for A0A146CJH9 (Zika virus)
Go to UniProtKB:  A0A146CJH9
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*AP*GP*AP*CP*U)-3')B9Zika virus
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
FLC
Query on FLC

Download SDF File 
Download CCD File 
A
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.598 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.162 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 52.355α = 90.00
b = 73.037β = 93.97
c = 58.696γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata scaling
XDSdata reduction
REFMACrefinement
XSCALEdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited KingdomWT098230
Wellcome TrustUnited KingdomWT101528

Revision History 

  • Version 1.0: 2017-01-11
    Type: Initial release