5ME8

N-terminal domain of the human tumor suppressor ING5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The tumor suppressor ING5 is a dimeric molecule with Bivalent Recognition of the H3K4me3 mark

Rodriguez Buitrago, J.A.R.Blanco, F.J.Rojas, A.L.Ormaza, G.Roversi, P.de Opakua, A.I.Merino, N.Villate, M.Palmero, I.Vilaseca, M.Kypta, R.del Mar Vivanco, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Inhibitor of growth protein 5
A, B
107Homo sapiensMutation(s): 0 
Gene Names: ING5
Find proteins for Q8WYH8 (Homo sapiens)
Go to Gene View: ING5
Go to UniProtKB:  Q8WYH8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MPD
Query on MPD

Download SDF File 
Download CCD File 
A, B
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.211 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 135.630α = 90.00
b = 135.630β = 90.00
c = 96.670γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
XDSdata scaling
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-14
    Type: Initial release