Biological Assembly 1  

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 80-mer - A2BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZa Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 80-mer -A3B2C2DEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWX 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 3599383.50 
• Atom Count: 229285 
• Residue Count: 21422 
• Unique protein chains: 79
• Unique nucleic acid chains: 7

5MC6

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

• DOI: 10.2210/pdb5MC6/pdb
• EMDataBank: EMD-3461

• Classification: RIBOSOME
• Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Saccharomyces cerevisiae S288C


• Deposited: 2016-11-09 Released: 2017-01-18 
• Deposition Author(s): Schmidt, C., Kowalinski, E., Shanmuganathan, V., Defenouillere, Q., Braunger, K., Heuer, A., Pech, M., Namane, A., Berninghausen, O., Fromont-Racine, M., Jacquier, A., Conti, E., Becker, T., Beckmann, R.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.8 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The cryo-EM structure of a ribosome-Ski2-Ski3-Ski8 helicase complex.

Schmidt, C., Kowalinski, E., Shanmuganathan, V., Defenouillere, Q., Braunger, K., Heuer, A., Pech, M., Namane, A., Berninghausen, O., Fromont-Racine, M., Jacquier, A., Conti, E., Becker, T., Beckmann, R.

(2016) Science 354: 1431-1433

• PubMed: 27980209 
• DOI: 10.1126/science.aaf7520


• PubMed Abstract: 
  

Ski2-Ski3-Ski8 (Ski) is a helicase complex functioning with the RNA-degrading exosome to mediate the 3'-5' messenger RNA (mRNA) decay in turnover and quality-control pathways. We report that the Ski complex directly associates with 80S ribosomes presenting a short mRNA 3' overhang. We determined the structure of an endogenous ribosome-Ski complex using cryo-electron microscopy (EM) with a local resolution of the Ski complex ranging from 4 angstroms (Å) in the core to about 10 Å for intrinsically flexible regions. Ribosome binding displaces the autoinhibitory domain of the Ski2 helicase, positioning it in an open conformation near the ribosomal mRNA entry tunnel. We observe that the mRNA 3' overhang is threaded directly from the small ribosomal subunit to the helicase channel of Ski2, primed for ongoing exosome-mediated 3'-5' degradation.

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Organizational Affiliation: 

Gene Center and Center for Integrated Protein Science Munich, Department of Biochemistry, Feodor-Lynen-Strasse 25, University of Munich, 81377 Munich, Germany.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S3	A	240	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS3 (SUF14)
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS3 Go to UniProtKB:  P05750

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S5	B	225	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS5 (RPS2)
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS5 Go to UniProtKB:  P26783

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S10-A	C	105	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS10A
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q08745

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S12	D	143	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS12
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS12 Go to UniProtKB:  P48589

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S15	E	142	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS15 (RPS21)
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS15 Go to UniProtKB:  Q01855

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S16-A	F	143	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS16A (RP61R)
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX51

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S17-B	G	136	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS17B (RP51B)
Find proteins for P14127 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P14127

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S18-A	H	146	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS18A
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX55

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S19-A	I	144	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS19A (RP55A, RPS16AA)
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P07280

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S20	J	121	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS20 (URP2)
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS20 Go to UniProtKB:  P38701

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S25-A	K	108	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS25A (RPS31A)
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q3E792

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S28-B	L	67	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS28B (RPS33B)
Find proteins for P0C0X0 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0X0

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S29-A	M	56	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS29A (RPS36A, YS29A)
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P41057

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details
Ubiquitin-40S ribosomal protein S31	N	152	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS31 (RPS37, UBI3)
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05759

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details
Guanine nucleotide-binding protein subunit beta-like protein	O	319	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: ASC1 (CPC2)
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P38011

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S0-A	P	252	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS0A (NAB1, NAB1A, YST1)
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P32905

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S1-A	Q	255	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS1A (PLC1, RPS10A)
Find proteins for P33442 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P33442

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S2	R	254	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS2 (RPS4, SUP38, SUP44)
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS2 Go to UniProtKB:  P25443

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S4-A	S	261	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS4A (RPS7B)
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX35

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S6-A	T	236	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS6A (RPS101, RPS10B)
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX37

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S7-A	U	190	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS7A (RPS30)
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P26786

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S8-A	V	200	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS8A (RPS14A)
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX39

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S9-A	W	197	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS9A (RPS13A, YS11A)
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  O13516

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S11-A	X	156	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS11A (RPS18A)
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX47

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S13	Y	151	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS13 (RPS13C)
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS13 Go to UniProtKB:  P05756

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S14-A	Z	137	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS14A (CRY1, RPL59)
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P06367

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S21-A	a	87	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS21A (RPS25, RPS25A, RPS26A)
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0V8

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S22-A	b	130	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS22A (RPS24, RPS24A)
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0W1

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S23-A	c	145	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS23A (RPS28A)
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX29

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S24-A	d	135	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS24A (RPS24EA)
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX31

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S26-A	e	119	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS26A (RPS26)
Find proteins for P39938 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P39938

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S27-A	f	82	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS27A
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS27A Go to UniProtKB:  P35997

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S30-A	g	63	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS30A
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX33

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details
Antiviral helicase SKI2	h	1287	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: SKI2 EC: 3.6.4.13
Find proteins for P35207 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P35207

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details
Superkiller protein 3	i	1432	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: SKI3
Find proteins for P17883 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P17883

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details
Antiviral protein SKI8	j, k	397	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: SKI8 (REC103)
Find proteins for Q02793 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02793

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L8-A	AA	256	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL8A (MAK7, RPL4A)
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P17076

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L23-A	AB	137	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL23A (RPL17A, RPL17AA)
Find proteins for P0CX41 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL23A Go to UniProtKB:  P0CX41

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L36-A	AC	100	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL36A (RPL39A)
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL36A Go to UniProtKB:  P05745

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L9-A	AD	191	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL9A (RPL8A, RPL9)
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05738

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L24-A	AE	155	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL24A (RP29, RPL30A)
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P04449

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L37-A	AF	88	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL37A (RPL35A)
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL37A Go to UniProtKB:  P49166

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L11-A	AG	174	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL11A (RP39A, RPL16A)
Find proteins for P0C0W9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0W9

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L25	AH	142	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL25
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P04456

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L38	AI	78	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL38
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL38 Go to UniProtKB:  P49167

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L13-A	AJ	199	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL13A
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL13A Go to UniProtKB:  Q12690

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L26-A	AK	127	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL26A (RPL26, RPL33A)
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05743

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L39	AL	51	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL39 (RPL46, SPB2)
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL39 Go to UniProtKB:  P04650

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L14-A	AM	138	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL14A
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P36105

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L27-A	AN	136	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL27A (RPL27)
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL27A Go to UniProtKB:  P0C2H6

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details
Ubiquitin-60S ribosomal protein L40	AO	128	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL40A (UBI1)
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CH08

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L42-A	AP	106	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL42A (RPL41A, SCL41A)
Find proteins for P0CX27 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX27

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L15-A	AQ	204	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL15A (RPL10A, RPL13A, YL10A)
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05748

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L28	AR	149	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL28 (CYH2)
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL28 Go to UniProtKB:  P02406

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L41-A	AS	25	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL41A (RPL47A, YL41A)
Find proteins for P0CX86 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX86

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L43-A	AT	92	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL43A
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX25

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L16-A	AU	199	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL16A (RPL13, RPL21A)
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P26784

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L29	AV	59	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL29 (YL43)
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL29 Go to UniProtKB:  P05747

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L2-A	AW	254	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL2A (RPL5B)
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX45

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L17-A	AX	184	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL17A (RPL17, RPL20A)
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05740

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L30	AY	105	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL30 (RPL32)
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL30 Go to UniProtKB:  P14120

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details
uL1	AZ	210	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L3	BA	387	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL3 (MAK8, TCM1)
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL3 Go to UniProtKB:  P14126

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L18-A	BB	186	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL18A (RP28A)
Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL18A Go to UniProtKB:  P0CX49

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L31-A	BC	113	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL31A (RPL34, RPL34A)
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C2H8

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L10	BD	221	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL10 (GRC5, QSR1)
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL10 Go to UniProtKB:  P41805

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L4-A	BE	362	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL4A (RPL2, RPL2A)
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P10664

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L19-A	BF	189	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL19A (RPL23A, YL14A)
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX82

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L32	BG	130	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL32
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL32 Go to UniProtKB:  P38061

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L20-A	BH	172	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL20A (RPL18A, RPL18A2)
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX23

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L5	BI	297	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL5 (RPL1, RPL1A)
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL5 Go to UniProtKB:  P26321

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L21-A	BJ	160	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL21A (URP1)
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02753

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L33-A	BK	107	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL33A (RPL37A)
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05744

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L22-A	BL	121	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL22A
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05749

Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L6-A	BM	176	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL6A (RPL17A, YL16A)
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02326

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L34-A	BN	121	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL34A
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P87262

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L7-A	BO	244	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL7A (RPL6A, RPL8A, YL8A)
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL7A Go to UniProtKB:  P05737

Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L35-A	BP	120	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL35A (SOS1)
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL35A Go to UniProtKB:  P0CX84

Entity ID: 86
Molecule	Chains	Sequence Length	Organism	Details
Eukaryotic translation initiation factor 5A-1	BT	157	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: HYP2 (TIF51A)
Find proteins for P23301 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P23301

Entity ID: 1
Molecule	Chains	Length	Organism
18S ribosomal RNA	2	1800	Saccharomyces cerevisiae S288C

Entity ID: 35
Molecule	Chains	Length	Organism
mRNA	l	34	Saccharomyces cerevisiae S288C

Entity ID: 36
Molecule	Chains	Length	Organism
A-site tRNA	m	76	Saccharomyces cerevisiae S288C

Entity ID: 37
Molecule	Chains	Length	Organism
P-site tRNA	n	77	Saccharomyces cerevisiae S288C

Entity ID: 83
Molecule	Chains	Length	Organism
25S ribosomal RNA	BQ	3396	Saccharomyces cerevisiae S288C

Entity ID: 84
Molecule	Chains	Length	Organism
5S ribosomal RNA	BR	121	Saccharomyces cerevisiae S288C

Entity ID: 85
Molecule	Chains	Length	Organism
5.8S ribosomal RNA	BS	158	Saccharomyces cerevisiae S288C

Small Molecules

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
UNK	AZ	L-PEPTIDE LINKING	C4 H9 N O2		--
5CT	BT	peptide linking	C10 H23 N3 O3		LYS

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.8 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2016-11-09 
• Released Date: 2017-01-18 
• Deposition Author(s): Schmidt, C., Kowalinski, E., Shanmuganathan, V., Defenouillere, Q., Braunger, K., Heuer, A., Pech, M., Namane, A., Berninghausen, O., Fromont-Racine, M., Jacquier, A., Conti, E., Becker, T., Beckmann, R.

Revision History 

• Version 1.0: 2017-01-18
  Type: Initial release
• Version 1.1: 2017-08-30
  Type: Data collection, Derived calculations
• Version 1.2: 2018-11-21
  Type: Advisory, Data collection, Derived calculations