5MB7

Cocktail experiment B: fragments 224 and 236 at 50mM concentration


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.299 Å
  • R-Value Free: 0.150 
  • R-Value Work: 0.129 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Comparison of cocktail versus single soaking experiments

Radeva, N.Heine, A.Klebe, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endothiapepsin
A
330Cryphonectria parasiticaMutation(s): 0 
Gene Names: EAPA (EPN-1)
EC: 3.4.23.22
Find proteins for P11838 (Cryphonectria parasitica)
Go to UniProtKB:  P11838
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
4AV
Query on 4AV

Download SDF File 
Download CCD File 
A
1-(2-chloro-5-nitrophenyl)-N-methylmethanamine
C8 H9 Cl N2 O2
YRTNCUPHKWUHMQ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.299 Å
  • R-Value Free: 0.150 
  • R-Value Work: 0.129 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 45.398α = 90.00
b = 72.858β = 109.46
c = 52.710γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
Cootmodel building
XSCALEdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
BMBFGermany05K13RM1

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release