Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 14469.37 
• Atom Count: 965 
• Residue Count: 124 
• Unique protein chains: 1

5M9A

Human angiogenin PD variant H13R

• DOI: 10.2210/pdb5M9A/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): 1 


• Deposited: 2016-11-01 Released: 2017-02-22 
• Deposition Author(s): Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.
• Funding Organization(s): Wellcome Trust 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 0.297 
• R-Value Work: 0.232 

Literature

Structural insights into human angiogenin variants implicated in Parkinson's disease and Amyotrophic Lateral Sclerosis.

Bradshaw, W.J., Rehman, S., Pham, T.T., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

(2017) Sci Rep 7: 41996-41996

• PubMed: 28176817 
• DOI: 10.1038/srep41996
• Primary Citation of Related Structures:  
  5M9V, 5M9T, 5M9S, 5M9R, 5M9Q, 5M9P, 5M9M, 5M9J, 5M9G, 5M9C


• PubMed Abstract: 
  

Mutations in Angiogenin (ANG), a member of the Ribonuclease A superfamily (also known as RNase 5) are known to be associated with Amyotrophic Lateral Sclerosis (ALS, motor neurone disease) (sporadic and familial) and Parkinson's Disease (PD). In our previous studies we have shown that ANG is expressed in neurons during neuro-ectodermal differentiation, and that it has both neurotrophic and neuroprotective functions. In addition, in an extensive study on selective ANG-ALS variants we correlated the structural changes to the effects on neuronal survival and the ability to induce stress granules in neuronal cell lines. Furthermore, we have established that ANG-ALS variants which affect the structure of the catalytic site and either decrease or increase the RNase activity affect neuronal survival. Neuronal cell lines expressing the ANG-ALS variants also lack the ability to form stress granules. Here, we report a detailed experimental structural study on eleven new ANG-PD/ALS variants which will have implications in understanding the molecular basis underlying their role in PD and ALS.

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Organizational Affiliation: 

Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Angiogenin	A	124	Homo sapiens	Mutation(s): 1  Gene Names: ANG (RNASE5) EC: 3.1.27.-
Find proteins for P03950 (Homo sapiens) Go to Gene View: ANG Go to UniProtKB:  P03950

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
TAR	A	D(-)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-LWMBPPNESA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 0.297 
• R-Value Work: 0.232 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 37.379	α = 90.00
b = 85.606	β = 90.00
c = 32.787	γ = 90.00

Software Package:

Software Name	Purpose
DIALS	data reduction
PHASER	phasing
Aimless	data scaling
REFMAC	refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2016-11-01 
• Released Date: 2017-02-22 
• Deposition Author(s): Bradshaw, W.J., Rehman, S., Pham, T.T.K., Thiyagarajan, N., Lee, R.L., Subramanian, V., Acharya, K.R.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	083191
Wellcome Trust	United Kingdom	088464

Revision History 

• Version 1.0: 2017-02-22
  Type: Initial release