5M6J

Crystal structure of nitrophorin 7 E27V mutant from Rhodnius prolixus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7.

Abbruzzetti, S.Allegri, A.Bidon-Chanal, A.Ogata, H.Soavi, G.Cerullo, G.Bruno, S.Montali, C.Luque, F.J.Viappiani, C.

(2018) Sci Rep 8: 10855-10855


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nitrophorin-7
A
184Rhodnius prolixusMutation(s): 0 
EC: 1.7.6.1
Find proteins for Q6PQK2 (Rhodnius prolixus)
Go to UniProtKB:  Q6PQK2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.161 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 38.228α = 90.00
b = 66.885β = 116.57
c = 38.714γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
MOLREPphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-10-25 
  • Released Date: 2017-12-20 
  • Deposition Author(s): Ogata, H.

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release
  • Version 1.1: 2018-08-22
    Type: Data collection, Database references