5M49

Alpha-amino epsilon-caprolactam racemase in complex with PLP and D/L alpha amino epsilon-caprolactam (internal aldimine)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Snapshots of the Catalytic Cycle of the Industrial Enzyme alpha-Amino-epsilon-Caprolactam Racemase (ACLR) Observed Using X-ray Crystallography

Frese, A.Sutton, P.W.Turkenburg, J.P.Grogan, G.

(2017) Acs Catalysis 7: 1045-1048


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aminotransferase class-III
A
436Rhizobium freirei PRF 81Mutation(s): 0 
Find proteins for N6UXY4 (Rhizobium freirei PRF 81)
Go to UniProtKB:  N6UXY4
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
7F4
Query on 7F4

Download SDF File 
Download CCD File 
A
(3~{R})-3-azanylazepan-2-one
C6 H12 N2 O
BOWUOGIPSRVRSJ-RXMQYKEDSA-N
 Ligand Interaction
PLP
Query on PLP

Download SDF File 
Download CCD File 
A
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
8F4
Query on 8F4

Download SDF File 
Download CCD File 
A
(3~{S})-3-azanylazepan-2-one
C6 H12 N2 O
BOWUOGIPSRVRSJ-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 87.696α = 90.00
b = 77.679β = 112.68
c = 57.602γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
MOLREPphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-19
    Type: Initial release
  • Version 1.1: 2017-09-20
    Type: Database references