5M2Z

Crystal structure of the full-length Zika virus NS5 protein (Human isolate Z1106033)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.8 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.241 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the full-length Zika virus NS5 protein (Human isolate Z1106033)

Ferrero, D.S.Ruiz-Arroyo, V.M.Soler, N.Uson, I.Verdaguer, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NS5
A, C, B, D, E, F
914Zika virusMutation(s): 0 
Find proteins for A0A0X8GJ44 (Zika virus)
Go to UniProtKB:  A0A0X8GJ44
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C, D, E, F
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D, E, F
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SAH
Query on SAH

Download SDF File 
Download CCD File 
C, E, F
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.8 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.241 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 234.578α = 90.00
b = 234.578β = 90.00
c = 406.123γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
MOLREPphasing
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Economy and CompetitivenessSpainBIO2014-54588
Maria de Maeztu Unit of ExcellenceSpainMDM-2014-0435

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release