5M02

Crystal structure of murine P14 TCR / H-2Db with PF, modified gp33 peptide from LCMV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report



Literature

Thernary complexes of TCR P14 give insights into the mechanisms behind reestablishment of CTL responses against a viral escape mutant

Allerbring, E.Duru, A.Sun, R.Han, X.Uchtenhagen, H.Madhurantakam, C.Popov, A.Markova, N.Talyzina, A.Nygren, P.A.Sandalova, T.Achour, A.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
H-2 class I histocompatibility antigen, D-B alpha chainA276Mus musculusMutation(s): 0 
Gene Names: H2-D1
Find proteins for P01899 (Mus musculus)
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Protein Feature View
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB119Mus musculusMutation(s): 1 
Gene Names: B2m
Find proteins for P01887 (Mus musculus)
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NIH Common Fund Data Resources
IMPC  MGI:88127
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Protein Trav14-1,T-cell receptor alpha chain C regionG205Mus musculusMutation(s): 0 
Gene Names: Trav14-1
Find proteins for P01849 (Mus musculus)
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Go to UniProtKB:  P01849
Find proteins for A0A0G2JF94 (Mus musculus)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta chain V region C5,T-cell receptor beta-2 chain C regionH238Mus musculusMutation(s): 0 
Find proteins for P04213 (Mus musculus)
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Find proteins for P01851 (Mus musculus)
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Protein Feature View
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND PFP9Lymphocytic choriomeningitis mammarenavirusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download CCD File 
A, H
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 255.11α = 90
b = 46.5β = 94.6
c = 89.02γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release