5M01

Crystal structure of murine P14 TCR/ H-2Db complex with PA, modified gp33 peptide from LCMV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Thernary complexes of TCR P14 give insights into the mechanisms behind reestablishment of CTL responses against a viral escape mutant

Allerbring, E.Duru, A.Sun, R.Han, X.Uchtenhagen, H.Madhurantakam, C.Popov, A.Markova, N.Talyzina, A.Nygren, P.A.Sandalova, T.Achour, A.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
H-2 class I histocompatibility antigen, D-B alpha chainA276Mus musculusMutation(s): 0 
Gene Names: H2-D1
Find proteins for P01899 (Mus musculus)
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Go to UniProtKB:  P01899
Protein Feature View
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB119Mus musculusMutation(s): 1 
Gene Names: B2m
Find proteins for P01887 (Mus musculus)
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NIH Common Fund Data Resources
IMPC  MGI:88127
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Protein Trav14-1,T-cell receptor alpha chain C regionG205Mus musculusMutation(s): 0 
Gene Names: Trav14-1
Find proteins for P01849 (Mus musculus)
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Go to UniProtKB:  P01849
Find proteins for A0A0G2JF94 (Mus musculus)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta chain V region C5,T-cell receptor beta-2 chain C regionH238Mus musculusMutation(s): 0 
Find proteins for P04213 (Mus musculus)
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Go to UniProtKB:  P04213
Find proteins for P01851 (Mus musculus)
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Protein Feature View
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND PAP9Lymphocytic choriomeningitis mammarenavirusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download CCD File 
A
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 255.926α = 90
b = 46.542β = 94.34
c = 89.398γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-10-25
    Type: Initial release
  • Version 1.1: 2018-02-14
    Changes: Database references