5M00

Crystal structure of murine P14 TCR complex with H-2Db and Y4A, modified gp33 peptide from LCMV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Thernary complexes of TCR P14 give insights into the mechanisms behind reestablishment of CTL responses against a viral escape mutant

Allerbring, E.Duru, A.Sun, R.Han, X.Uchtenhagen, H.Madhurantakam, C.Popov, A.Markova, N.Talyzina, A.Nygren, P.A.Sandalova, T.Achour, A.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
H-2 class I histocompatibility antigen, D-B alpha chainA276Mus musculusMutation(s): 0 
Gene Names: H2-D1
Find proteins for P01899 (Mus musculus)
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Go to UniProtKB:  P01899
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB119Mus musculusMutation(s): 0 
Gene Names: B2m
Find proteins for P01887 (Mus musculus)
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NIH Common Fund Data Resources
IMPC  MGI:88127
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Protein Trav14-1,Uncharacterized proteinG205Mus musculusMutation(s): 0 
Gene Names: Trav14-1
Find proteins for Q6PIR9 (Mus musculus)
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Go to UniProtKB:  Q6PIR9
Find proteins for A0A0G2JF94 (Mus musculus)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta chain V region C5,Uncharacterized proteinH238Mus musculusMutation(s): 0 
Find proteins for P04213 (Mus musculus)
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Go to UniProtKB:  P04213
Find proteins for Q7TND8 (Mus musculus)
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Protein Feature View
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  • Reference Sequence
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND Y4AP9Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.201 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 258.455α = 90
b = 46.941β = 94.24
c = 90.253γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release
  • Version 1.1: 2018-02-14
    Changes: Database references