Crystal structure of human JARID1B in complex with S40563a
srikannathasan, v.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific demethylase 5B,Lysine-specific demethylase 5B | A | 481 | Homo sapiens | Mutation(s): 0  Gene Names: KDM5B, JARID1B, PLU1, RBBP2H1 EC: 1.14.11 (PDB Primary Data), 1.14.11.67 (UniProt) | ![]() |
Find proteins for Q9UGL1 (Homo sapiens) Explore Q9UGL1  Go to UniProtKB:  Q9UGL1 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  Q9UGL1 GTEx:  ENSG00000117139 | |||||
Protein Feature ViewExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
5UJ Query on 5UJ | A | 8-[4-[2-[4-[3,5-bis(chloranyl)phenyl]piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one C23 H22 Cl2 N6 O RLRGPZGIQMEBLC-UHFFFAOYSA-N | Ligand Interaction | ||
DMS Query on DMS | A | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | Ligand Interaction | ||
ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction | ||
EDO Query on EDO | A | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
MN Query on MN | A | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 142.96 | α = 90 |
b = 142.96 | β = 90 |
c = 152.47 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
MOLREP | data collection |
PDB_EXTRACT | data extraction |
xia2 | data reduction |
XDS | data scaling |
MOLREP | phasing |