5LV0

Structure of Human Neurolysin (E475Q) in complex with amyloid-beta 35-40 peptide product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural and functional analysis of Neurolysin, a new component of the mitochondrial peptidolytic network

Teixeira, P.F.Masuyer, G.Pinho, C.Branca, R.M.M.Kmiec, B.Wallin, C.Warmlander, S.Berntsson, R.P.-A.Ankarcrona, M.Graslund, A.Lehtio, J.Stenmark, P.Glaser, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neurolysin, mitochondrial
A, B
686Homo sapiensMutation(s): 1 
Gene Names: NLN (AGTBP, KIAA1226)
EC: 3.4.24.16
Find proteins for Q9BYT8 (Homo sapiens)
Go to Gene View: NLN
Go to UniProtKB:  Q9BYT8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
GLY-VAL-VAL amyloid 35-40 fragment
C, D
6Homo sapiensMutation(s): 0 
Gene Names: APP (A4, AD1)
Find proteins for P05067 (Homo sapiens)
Go to Gene View: APP
Go to UniProtKB:  P05067
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 131.341α = 90.00
b = 131.341β = 90.00
c = 195.979γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
iMOSFLMdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2014-5667

Revision History 

  • Version 1.0: 2017-12-06
    Type: Initial release
  • Version 1.1: 2018-02-07
    Type: Database references, Structure summary