5LUG

Crystal structure of human Spindlin-2B protein in complex with ART(M3L)QTA(2MR)KS peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of human Spindlin-2B protein in complex with ART(M3L)QTA(2MR)KS peptide

Srikannathasan, V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Spindlin-like protein 2, isoform CRA_a
A, B, C, D
222Homo sapiensMutation(s): 0 
Gene Names: SPIN2B (SPIN2)
Find proteins for Q9BPZ2 (Homo sapiens)
Go to Gene View: SPIN2B
Go to UniProtKB:  Q9BPZ2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ALA-ARG-THR-M3L-GLN-THR-ALA-2MR-LYS-SER
F, G, H, E
10Homo sapiensMutation(s): 0 
Gene Names: HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J (H3FA, H3FL, H3FC, H3FB, H3FD, H3FI, H3FH, H3FK, H3FF, H3FJ)
Find proteins for P68431 (Homo sapiens)
Go to UniProtKB:  P68431
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B, D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
2MR
Query on 2MR

Download SDF File 
Download CCD File 
B
N3, N4-DIMETHYLARGININE
C8 H18 N4 O2
HVPFXCBJHIIJGS-LURJTMIESA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
M3L
Query on M3L
E, F, G, H
L-PEPTIDE LINKINGC9 H21 N2 O2LYS
2MR
Query on 2MR
E, F, G, H
L-PEPTIDE LINKINGC8 H18 N4 O2ARG
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.194 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 66.533α = 90.00
b = 81.225β = 99.86
c = 93.967γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
MOLREPphasing
PDB_EXTRACTdata extraction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-09-20
    Type: Initial release
  • Version 1.1: 2018-01-31
    Type: Database references