5LS8

Light-activated ruthenium complex bound to a DNA quadruplex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Chiral recognition of a DNA quadruplex by a light-activated ruthenium complex

McQuaid, K.T.Abell, H.Brazier, J.Cardin, C.J.Hall, J.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*A)-3')A,B,C,D8synthetic construct
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
QHL
Query on QHL

Download SDF File 
Download CCD File 
A, C
delta-[Ru(tap2-dppz-CN]2+
Cyano-derivative of Ruthenium-dipyridophenazine
C39 H21 N13 Ru
HNFPSJMHTKCUIN-UHFFFAOYSA-N
 Ligand Interaction
KSB
Query on KSB

Download SDF File 
Download CCD File 
A, B, C, D
lambda-[Ru(tap2-dppz-CN]2+
Cyano-derivative of Ruthenium-dipyridophenazine
C39 H21 N13 Ru
HNFPSJMHTKCUIN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.214 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 36.625α = 90.00
b = 36.625β = 90.00
c = 136.104γ = 120.00
Software Package:
Software NamePurpose
xia2data scaling
DIALSdata reduction
PHENIXrefinement
DIALSdata scaling
SHELXDEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/K019279/1
Biotechnology and Biological Sciences Research CouncilUnited KingdomMM/M004635/1

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release