5LNX | pdb_00005lnx

Crystal structure of MmgC, an acyl-CoA dehydrogenase from bacillus subtilis.

PDB DOI: https://doi.org/10.2210/pdb5LNX/pdb

Classification: OXIDOREDUCTASE
Organism(s): Bacillus subtilis subsp. subtilis str. 168
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2016-08-07 Released: 2017-08-16
Deposition Author(s): Baker, G.E., Race, P.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.285 (Depositor), 0.260 (DCC)
R-Value Work:
0.247 (Depositor), 0.224 (DCC)
R-Value Observed:
0.249 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of acyl-CoA dehydrogenase (MmgC) from bacillus subtilis.

Baker, G.E., Race, P.R.

To be published.

Macromolecule Content

Total Structure Weight: 335.25 kDa
Atom Count: 22,225
Modeled Residue Count: 2,958
Deposited Residue Count: 3,032
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA dehydrogenase	A, B, C, D, E A, B, C, D, E, F, G, H	379	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: mmgC, yqiN, BSU24150 EC: 1.3.99
UniProt
Find proteins for P45857 (Bacillus subtilis (strain 168)) Explore P45857 Go to UniProtKB: P45857
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P45857
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD Query on FAD Download:Ideal Coordinates CCD File SDF format, chain AA [auth H] SDF format, chain L [auth A] SDF format, chain M [auth B] SDF format, chain Q [auth C] SDF format, chain S [auth D] SDF format, chain T [auth E] SDF format, chain V [auth F] SDF format, chain Y [auth G] MOL2 format, chain AA [auth H] MOL2 format, chain L [auth A] MOL2 format, chain M [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain S [auth D] MOL2 format, chain T [auth E] MOL2 format, chain V [auth F] MOL2 format, chain Y [auth G] mmCIF format, chain AA [auth H] mmCIF format, chain L [auth A] mmCIF format, chain M [auth B] mmCIF format, chain Q [auth C] mmCIF format, chain S [auth D] mmCIF format, chain T [auth E] mmCIF format, chain V [auth F] mmCIF format, chain Y [auth G]	AA [auth H] L [auth A] M [auth B] Q [auth C] S [auth D] AA [auth H], L [auth A], M [auth B], Q [auth C], S [auth D], T [auth E], V [auth F], Y [auth G]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain AA [auth H] Focus chain L [auth A] Focus chain M [auth B] Focus chain Q [auth C] Focus chain S [auth D] Focus chain T [auth E] Focus chain V [auth F] Focus chain Y [auth G] Interactions & Density Focus chain AA [auth H] Focus chain L [auth A] Focus chain M [auth B] Focus chain Q [auth C] Focus chain S [auth D] Focus chain T [auth E] Focus chain V [auth F] Focus chain Y [auth G]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain N [auth C] SDF format, chain O [auth C] SDF format, chain P [auth C] SDF format, chain R [auth D] SDF format, chain Z [auth H] SDF format, chain X [auth G] SDF format, chain W [auth G] SDF format, chain U [auth F] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain N [auth C] MOL2 format, chain O [auth C] MOL2 format, chain P [auth C] MOL2 format, chain R [auth D] MOL2 format, chain Z [auth H] MOL2 format, chain X [auth G] MOL2 format, chain W [auth G] MOL2 format, chain U [auth F] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain K [auth A] mmCIF format, chain N [auth C] mmCIF format, chain O [auth C] mmCIF format, chain P [auth C] mmCIF format, chain R [auth D] mmCIF format, chain Z [auth H] mmCIF format, chain X [auth G] mmCIF format, chain W [auth G] mmCIF format, chain U [auth F]	I [auth A] J [auth A] K [auth A] N [auth C] O [auth C] I [auth A], J [auth A], K [auth A], N [auth C], O [auth C], P [auth C], R [auth D], U [auth F], W [auth G], X [auth G], Z [auth H]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain N [auth C] Focus chain O [auth C] Focus chain P [auth C] Focus chain R [auth D] Focus chain U [auth F] Focus chain W [auth G] Focus chain X [auth G] Focus chain Z [auth H] Interactions & Density Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain N [auth C] Focus chain O [auth C] Focus chain P [auth C] Focus chain R [auth D] Focus chain U [auth F] Focus chain W [auth G] Focus chain X [auth G] Focus chain Z [auth H]