5LME | pdb_00005lme

Specific-DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 4000 
  • Conformers Submitted: 24 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase.

Morellet, N.Li, X.Wieninger, S.A.Taylor, J.L.Bischerour, J.Moriau, S.Lescop, E.Bardiaux, B.Mathy, N.Assrir, N.Betermier, M.Nilges, M.Hickman, A.B.Dyda, F.Craig, N.L.Guittet, E.

(2018) Nucleic Acids Res 46: 2660-2677

  • DOI: https://doi.org/10.1093/nar/gky044
  • Primary Citation Related Structures: 
    5LME

  • PubMed Abstract: 

    The piggyBac transposase (PB) is distinguished by its activity and utility in genome engineering, especially in humans where it has highly promising therapeutic potential. Little is known, however, about the structure-function relationships of the different domains of PB. Here, we demonstrate in vitro and in vivo that its C-terminal Cysteine-Rich Domain (CRD) is essential for DNA breakage, joining and transposition and that it binds to specific DNA sequences in the left and right transposon ends, and to an additional unexpectedly internal site at the left end. Using NMR, we show that the CRD adopts the specific fold of the cross-brace zinc finger protein family. We determine the interaction interfaces between the CRD and its target, the 5'-TGCGT-3'/3'-ACGCA-5' motifs found in the left, left internal and right transposon ends, and use NMR results to propose docking models for the complex, which are consistent with our site-directed mutagenesis data. Our results provide support for a model of the PB/DNA interactions in the context of the transpososome, which will be useful for the rational design of PB mutants with increased activity.


  • Organizational Affiliation
    • Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Saclay, 91198 Gif sur Yvette cedex, France.

Macromolecule Content 

  • Total Structure Weight: 5.25 kDa 
  • Atom Count: 351 
  • Modeled Residue Count: 43 
  • Deposited Residue Count: 43 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
piggyBac transposase43Trichoplusia niMutation(s): 0 
UniProt
Find proteins for Q27026 (Trichoplusia ni)
Explore Q27026 
Go to UniProtKB:  Q27026
Entity Groups
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UniProt GroupQ27026
Sequence Annotations
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Reference Sequence

Small Molecules

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 4000 
  • Conformers Submitted: 24 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-20
    Type: Initial release
  • Version 1.1: 2018-02-14
    Changes: Database references, Structure summary
  • Version 1.2: 2018-04-04
    Changes: Data collection, Database references
  • Version 1.3: 2019-05-08
    Changes: Data collection
  • Version 1.4: 2024-06-19
    Changes: Data collection, Database references