5LKA

Crystal structure of haloalkane dehalogenase LinB 140A+143L+177W+211L mutant (LinB86) from Sphingobium japonicum UT26 at 1.3 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.298 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.139 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Engineering a de novo transport tunnel.

Brezovsky, J.Babkova, P.Degtjarik, O.Fortova, A.Gora, A.Iermak, I.Rezacova, P.Dvorak, P.Kuta Smatanova, I.Prokop, Z.Chaloupkova, R.Damborsky, J.

(2016) Acs Catalysis --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Haloalkane dehalogenase
A
301Sphingobium japonicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)Mutation(s): 4 
Gene Names: linB
EC: 3.8.1.5
Find proteins for D4Z2G1 (Sphingobium japonicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S))
Go to UniProtKB:  D4Z2G1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SCN
Query on SCN

Download SDF File 
Download CCD File 
A
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.298 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.139 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 46.867α = 90.00
b = 68.362β = 90.00
c = 80.648γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
Cootmodel building
XDSdata reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-10-05
    Type: Initial release