5LDY

Structure of Yersinia pseudotuberculosis InvD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural and functional studies of Yersinia pseudotuberculosis adhesin protein InvD

Sadana, P.Geyer, R.Pezoldt, J.Helmsing, S.Huehn, J.Hust, M.Dersch, P.Scrima, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ig domain protein group 1 domain protein
A, B
357Yersinia pseudotuberculosis serotype O:3 (strain YPIII)Mutation(s): 0 
Find proteins for A0A0H3B1G5 (Yersinia pseudotuberculosis serotype O:3 (strain YPIII))
Go to UniProtKB:  A0A0H3B1G5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.230 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 58.900α = 90.00
b = 58.900β = 90.00
c = 274.590γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
XSCALEdata scaling
Cootmodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-06-28 
  • Released Date: 2017-06-14 
  • Deposition Author(s): Sadana, P., Scrima, A.

Funding OrganizationLocationGrant Number
Helmholtz AssociationGermanyVH-NG-727
Helmholtz AssociationGermanyVH-GS-202

Revision History 

  • Version 1.0: 2017-06-14
    Type: Initial release