5LDN

A viral capsid:antibody complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Antibody-antigen kinetics constrain intracellular humoral immunity.

Bottermann, M.Lode, H.E.Watkinson, R.E.Foss, S.Sandlie, I.Andersen, J.T.James, L.C.

(2016) Sci Rep 6: 37457-37457


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hexon protein,hexon capsid
A
927Human adenovirus C serotype 5Mutation(s): 0 
Gene Names: L3
Find proteins for P04133 (Human adenovirus C serotype 5)
Go to UniProtKB:  P04133
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
antibody
L
213N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
antibody
H
218N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.164 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 156.999α = 90.00
b = 156.999β = 90.00
c = 144.891γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-06-27 
  • Released Date: 2017-07-12 
  • Deposition Author(s): James, L.

Revision History 

  • Version 1.0: 2017-07-12
    Type: Initial release
  • Version 1.1: 2018-12-19
    Type: Data collection, Database references