5LBA

Crystal structure of human RECQL5 helicase in complex with DSPL fragment(1-cyclohexyl-3-(oxolan-2-ylmethyl)urea, SGC - Diamond XChem I04-1 fragment screening.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of human RECQL5 helicase in complex with 3D fragment (1-cyclohexyl-3-(oxolan-2-ylmethyl)urea)

Newman, J.A.Talon, R.Aitkenhead, H.Savitsky, P.Krojer, T.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Gileadi, O.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP-dependent DNA helicase Q5
B, A, C, D
445Homo sapiensMutation(s): 0 
Gene Names: RECQL5 (RECQ5)
EC: 3.6.4.12
Find proteins for O94762 (Homo sapiens)
Go to Gene View: RECQL5
Go to UniProtKB:  O94762
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ADP
Query on ADP

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Download CCD File 
A, B, C, D
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
6SV
Query on 6SV

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Download CCD File 
B
1-cyclohexyl-3-[[(2~{R})-oxolan-2-yl]methyl]urea
C12 H22 N2 O2
RYUZWZOTJULRNS-LLVKDONJSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A, B, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
DMS
Query on DMS

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Download CCD File 
A, B, D
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.237 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 63.926α = 109.90
b = 85.261β = 90.02
c = 105.915γ = 97.01
Software Package:
Software NamePurpose
XDSdata scaling
REFMACrefinement
REFMACphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History 

  • Version 1.0: 2016-07-06
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references, Structure summary