5L3T

Structure of the Saccharomyces cerevisiae TREX-2 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.927 Å
  • R-Value Free: 0.370 
  • R-Value Work: 0.338 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region.

Aibara, S.Bai, X.C.Stewart, M.

(2016) J. Struct. Biol. 195: 316-324


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear mRNA export protein SAC3
A
1301Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SAC3 (LEP1)
Find proteins for P46674 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P46674
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Nuclear mRNA export protein THP1
B
455Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: THP1 (BUD29)
Find proteins for Q08231 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q08231
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
26S proteasome complex subunit SEM1
C
89Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SEM1 (DSH1)
Find proteins for O94742 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: SEM1
Go to UniProtKB:  O94742
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Sac3polyAla
D, E
24N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Sac3polyAla
F
12N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
D, E, F
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.927 Å
  • R-Value Free: 0.370 
  • R-Value Work: 0.338 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 78.170α = 90.00
b = 84.090β = 90.00
c = 165.480γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-07-27
    Type: Initial release
  • Version 1.1: 2016-08-24
    Type: Database references
  • Version 1.2: 2018-10-10
    Type: Data collection, Database references, Source and taxonomy, Structure summary