5L2P | pdb_00005l2p

Structure of arylesterase

• PDB DOI: https://doi.org/10.2210/pdb5L2P/pdb

• Classification: HYDROLASE
• Organism(s): Saccharolobus solfataricus
• Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
• Mutation(s): No 


• Deposited: 2016-08-02 Released: 2017-08-09 
• Deposition Author(s): Lee, H.B., Park, Y.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free: 
  0.231 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.217 (Depositor) 

Starting Model: experimental

Literature

Structure of arylesterase

Lee, H.B., Park, Y.J.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 138.36 kDa 
• Atom Count: 9,684 
• Modeled Residue Count: 1,218 
• Deposited Residue Count: 1,224 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Arylesterase	A, B, C, D	306	Saccharolobus solfataricus	Mutation(s): 0  Gene Names: are EC: 3.1.1.2 (PDB Primary Data), 3.1.8.1 (PDB Primary Data)
UniProt
Find proteins for B5BLW5 (Saccharolobus solfataricus) Explore B5BLW5  Go to UniProtKB:  B5BLW5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free:  0.231 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.217 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.913	α = 90
b = 109.309	β = 109.37
c = 90.044	γ = 90

Software Package:

Software Name	Purpose
DENZO	data collection
SCALEPACK	data reduction
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-08-09 
Deposition Author(s): Lee, H.B., Park, Y.J.

Revision History  

• Version 1.0: 2017-08-09
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description