5L0N

PKG I's Carboxyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with RP-cGMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.285 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of PKG I CNB-B bound to RP-cGMP

Campbell, J.C.Sankaran, B.Kim, C.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
cGMP-dependent protein kinase 1
A
135Homo sapiensMutation(s): 0 
Gene Names: PRKG1 (PRKG1B, PRKGR1A, PRKGR1B)
EC: 2.7.11.12
Find proteins for Q13976 (Homo sapiens)
Go to Gene View: PRKG1
Go to UniProtKB:  Q13976
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
6ZA
Query on 6ZA

Download SDF File 
Download CCD File 
A
2-amino-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-sulfanylidenetetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-3,9-dihydro-6H-purin-6-one
C10 H12 N5 O6 P S
JZAJZXRXCHCRMU-KVBUDSETSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.285 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.167 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 39.889α = 90.00
b = 54.305β = 90.00
c = 56.450γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXphasing
iMOSFLMdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R01GM090161-02

Revision History 

  • Version 1.0: 2017-08-02
    Type: Initial release
  • Version 1.1: 2019-12-25
    Type: Author supporting evidence