5L03

Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA PSEUDOMALLEI bound to L-tryptophan hydroxamate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.469 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Synthesis and Characterization of the Burkholderia pseudomallei IspF Inhibitor L-tryptophan hydroxamate

Blain, J.M.Ghose, D.Gorman, J.L.Goshu, G.M.Ranieri, G.Zhao, L.Bode, B.Meganathan, R.Walter, R.L.Hagen, T.J.Horn, J.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
A, B, C
158Burkholderia pseudomalleiMutation(s): 0 
Gene Names: ispF
EC: 4.6.1.12
Find proteins for A0A069B2G5 (Burkholderia pseudomallei)
Go to UniProtKB:  A0A069B2G5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
6ZB
Query on 6ZB

Download SDF File 
Download CCD File 
A
N-hydroxy-L-tryptophanamide
N-hydroxy-L-tryptophanamide
C11 H13 N3 O2
LBMAEBPZXXNKMZ-VIFPVBQESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.469 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.179 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 116.515α = 90.00
b = 68.126β = 96.93
c = 60.659γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACphasing
HKL-2000data scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States1R15AI113653-01
National Science Foundation (United States)United StatesMCB-0953323

Revision History 

  • Version 1.0: 2017-11-08
    Type: Initial release