5KZT

Listeria monocytogenes OppA bound to peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.169 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptide/nickel transport system substrate-binding protein
A, B
536Listeria monocytogenes 10403SMutation(s): 0 
Gene Names: LMRG_01636
Find proteins for A0A0H3GJB6 (Listeria monocytogenes serotype 1/2a (strain 10403S))
Go to UniProtKB:  A0A0H3GJB6
Protein Feature View
  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hexamer peptide: SER-ASP-GLU-SER-LYS-GLY
C
6Escherichia coliMutation(s): 0 
Protein Feature View
  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Hexamer peptide: SER-ASP-GLU-SER-SER-GLY
D
6Escherichia coliMutation(s): 0 
Protein Feature View
  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.277α = 90
b = 74.63β = 109.38
c = 155.061γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-08-10
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Data collection, Derived calculations