5KVB | pdb_00005kvb

The crystal structure of hexachlorocyclohexane dehydrochlorinase LinA-type3 from Novosphingobium barchaimii LL02

• PDB DOI: https://doi.org/10.2210/pdb5KVB/pdb

• Classification: LYASE
• Organism(s): Novosphingobium barchaimii LL02
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-07-14 Released: 2017-07-19 
• Deposition Author(s): Dellas, N., Oakeshott, J., Pearce, S.L., Pandey, G., Pushiri, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 
  0.200 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.164 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.166 (Depositor) 

Starting Model: experimental

Literature

The crystal structure of hexachlorocyclohexane dehydrochlorinase LinA-type3 from Novosphingobium barchaimii LL02

Dellas, N., Oakeshott, J., Pearce, S.L., Pandey, G., Pushiri, H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 17.72 kDa 
• Atom Count: 1,339 
• Modeled Residue Count: 146 
• Deposited Residue Count: 156 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-hexachlorocyclohexane dehydrochlorinase	A	156	Novosphingobium barchaimii LL02	Mutation(s): 0  Gene Names: V474_07160
UniProt
Find proteins for A0A0J7XEF9 (Novosphingobium barchaimii LL02) Explore A0A0J7XEF9  Go to UniProtKB:  A0A0J7XEF9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free:  0.200 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.164 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.166 (Depositor) 

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.169	α = 90
b = 50.169	β = 90
c = 147.968	γ = 120

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MOLREP	phasing
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-07-19 
Deposition Author(s): Dellas, N., Oakeshott, J., Pearce, S.L., Pandey, G., Pushiri, H.

Revision History  

• Version 1.0: 2017-07-19
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description