Download MendeleyCrystal Structure of SMT Fusion Peptidyl-Prolyl Cis-Trans Isomerase from Burkholderia Pseudomallei Complexed with SF110
Lorimer, D.D., Fox III, D., Seufert, F., Edwards, T.E., Holzgrabe, U.To be published.
5KLX
Crystal Structure of SMT Fusion Peptidyl-Prolyl Cis-Trans Isomerase from Burkholderia Pseudomallei Complexed with SF110
- DOI: 10.2210/pdb5KLX/pdb
- Classification: ISOMERASE, protein binding
- Organism(s): Saccharomyces cerevisiae S288C, Burkholderia pseudomallei 1710b
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-06-26 Released: 2017-05-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.256
- R-Value Work: 0.198
- R-Value Observed: 0.201
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chimera protein of Ubiquitin-like protein SMT3 and Peptidyl-prolyl cis-trans isomerase | A, B, C, D | 209 | Saccharomyces cerevisiae S288C, Burkholderia pseudomallei 1710b This entity is chimeric | Mutation(s): 0 Gene Names: SMT3, YDR510W, D9719.15, BURPS1710b_A0907 EC: 5.2.1.8 |  |
UniProt | |||||
Find proteins for Q3JK38 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JK38 Go to UniProtKB: Q3JK38 | |||||
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12306 Go to UniProtKB: Q12306 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 6UO (Subject of Investigation/LOI) Query on 6UO | E [auth A], I [auth B], J [auth C], K [auth D] | 2-[(2~{S})-1-(phenylmethyl)sulfonylpiperidin-2-yl]carbonyloxyethyl pyridine-3-carboxylate C21 H24 N2 O6 S KUWLHSSIHRTCQU-IBGZPJMESA-N |  | Ligand Interaction | |
| PEG Query on PEG | H [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| IMD Query on IMD | G [auth A], M [auth D] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | Ligand Interaction | |
| MG Query on MG | F [auth A], L [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.256
- R-Value Work: 0.198
- R-Value Observed: 0.201
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 107.89 | α = 90 |
| b = 34.11 | β = 115.45 |
| c = 119.92 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PHENIX | phasing |
Entry History
Deposition Data
- Deposited Date: 2016-06-26
- Released Date: 2017-05-31 Deposition Author(s): Fox III, D., Edwards, T.E.
Revision History (Full details and data files)
- Version 1.0: 2017-05-31
Type: Initial release
