5KE3

Crystal structure of SETDB1 Tudor domain in complex with fragment MRT0181a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of SETDB1 Tudor domain in complex with fragment MRT0181a

Iqbal, A.Mader, P.Dong, A.Dobrovetsky, E.Ferreira de Freitas, R.Walker, J.R.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Schapira, M.Brown, P.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone-lysine N-methyltransferase SETDB1
A
213Homo sapiensMutation(s): 0 
Gene Names: SETDB1 (KIAA0067, KMT1E)
EC: 2.1.1.43
Find proteins for Q15047 (Homo sapiens)
Go to Gene View: SETDB1
Go to UniProtKB:  Q15047
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
BME
Query on BME

Download SDF File 
Download CCD File 
A
BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
 Ligand Interaction
6S5
Query on 6S5

Download SDF File 
Download CCD File 
A
(S)-N-(furan-2-ylmethyl)-1-(1,2,3,4-tetrahydroisoquinoline-3-carbonyl)piperidine-4-carboxamide
C21 H25 N3 O3
CHWQZRDDUSGKFB-IBGZPJMESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 54.300α = 90.00
b = 63.342β = 90.00
c = 69.187γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-08-03
    Type: Initial release