5KDK

Truncated hemolysin A from P. mirabilis at 2.0 Angstroms resolution crystallized in a high salt condition

PDB DOI: https://doi.org/10.2210/pdb5KDK/pdb

Classification: TOXIN
Organism(s): Proteus mirabilis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-06-08 Released: 2017-06-14
Deposition Author(s): Novak, W.R.P., Bhattacharyya, B., Weaver, T.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.189
R-Value Work: 0.159
R-Value Observed: 0.161

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of truncated hemolysin A from P. mirabilis at 2.0 Angstroms in high salt

Novak, W.R.P., Bhattacharyya, B., Grilley, D.P., Weaver, T.M.

To be published.

Macromolecule Content

Total Structure Weight: 25.48 kDa
Atom Count: 1,985
Modelled Residue Count: 233
Deposited Residue Count: 242
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemolysin	A	242	Proteus mirabilis	Mutation(s): 0 Gene Names: hpmA
UniProt
Find proteins for P16466 (Proteus mirabilis) Explore P16466 Go to UniProtKB: P16466
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P16466
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.189
R-Value Work: 0.159
R-Value Observed: 0.161
Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.44	α = 90
b = 80.15	β = 90
c = 96.61	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-06-14

Deposition Author(s):

Bhattacharyya, B.

Revision History (Full details and data files)

Version 1.0: 2017-06-14
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.