5K7Z

Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA

Bock, T.Volz, C.Mueller, R.Blankenfeldt, W.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional regulator, TetR family
A, B, C, D
231Myxococcus xanthus DK 1622Mutation(s): 0 
Gene Names: MXAN_4263
UniProt
Find proteins for Q1D4I5 (Myxococcus xanthus (strain DK1622))
Explore Q1D4I5 
Go to UniProtKB:  Q1D4I5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ1D4I5
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
DNA (32-MER)
E, F
16Myxococcus xanthus DK 1622
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 164.711α = 90
b = 164.711β = 90
c = 203.275γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-12-28
    Type: Initial release
  • Version 1.1: 2024-01-10
    Changes: Data collection, Database references, Derived calculations, Refinement description