5K6K

Zika virus non-structural protein 1 (NS1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Extended surface for membrane association in Zika virus NS1 structure.

Brown, W.C.Akey, D.L.Konwerski, J.R.Tarrasch, J.T.Skiniotis, G.Kuhn, R.J.Smith, J.L.

(2016) Nat.Struct.Mol.Biol. 23: 865-867

  • DOI: 10.1038/nsmb.3268

  • PubMed Abstract: 
  • The Zika virus, which has been implicated in an increase in neonatal microcephaly and Guillain-BarrĂ© syndrome, has spread rapidly through tropical regions of the world. The virulence protein NS1 functions in genome replication and host immune-system ...

    The Zika virus, which has been implicated in an increase in neonatal microcephaly and Guillain-Barré syndrome, has spread rapidly through tropical regions of the world. The virulence protein NS1 functions in genome replication and host immune-system modulation. Here, we report the crystal structure of full-length Zika virus NS1, revealing an elongated hydrophobic surface for membrane association and a polar surface that varies substantially among flaviviruses.


    Organizational Affiliation

    Life Sciences Institute, University of Michigan, Ann Arbor, Michigan, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Zika virus protein
A, B
376Zika virus (strain Mr 766)Mutation(s): 0 
Find proteins for Q32ZE1 (Zika virus (strain Mr 766))
Go to UniProtKB:  Q32ZE1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.149 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 96.160α = 90.00
b = 130.440β = 90.00
c = 147.950γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-07-06
    Type: Initial release
  • Version 1.1: 2016-07-13
    Type: Database references, Structure summary
  • Version 1.2: 2016-08-10
    Type: Database references
  • Version 1.3: 2016-09-21
    Type: Database references
  • Version 1.4: 2017-11-22
    Type: Derived calculations, Refinement description