5K24

Crystal structure of the complex between phosphatase PRL-2 in the oxidized state with the Bateman domain of murine magnesium transporter CNNM3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.252 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

PRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3.

Zhang, H.Kozlov, G.Li, X.Wu, H.Gulerez, I.Gehring, K.

(2017) Sci Rep 7: 48-48


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein tyrosine phosphatase type IVA 2
A, B
183Mus musculusMutation(s): 0 
Gene Names: Ptp4a2 (Prl2)
EC: 3.1.3.48
Find proteins for O70274 (Mus musculus)
Go to UniProtKB:  O70274
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Metal transporter CNNM3
C, D
153Mus musculusMutation(s): 0 
Gene Names: Cnnm3 (Acdp3)
Find proteins for Q32NY4 (Mus musculus)
Go to UniProtKB:  Q32NY4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download SDF File 
Download CCD File 
D
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.252 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 154.222α = 90.00
b = 52.119β = 106.02
c = 102.855γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-10-12
    Type: Initial release
  • Version 1.1: 2018-10-03
    Type: Data collection, Database references, Derived calculations