5JZB

Crystal structure of HsaD bound to 3,5-dichlorobenzene sulphonamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.102 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Investigation of the mycobacterial enzyme HsaD as a potential novel target for anti-tubercular agents using a fragment-based drug design approach.

Ryan, A.Polycarpou, E.Lack, N.A.Evangelopoulos, D.Sieg, C.Halman, A.Bhakta, S.Eleftheriadou, O.McHugh, T.D.Keany, S.Lowe, E.D.Ballet, R.Abuhammad, A.Jacobs, W.R.Ciulli, A.Sim, E.

(2017) Br. J. Pharmacol. 174: 2209-2224


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase
A, B
282Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)Mutation(s): 0 
Gene Names: hsaD (bphD)
EC: 3.7.1.17
Find proteins for P9WNH5 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Go to UniProtKB:  P9WNH5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
6OT
Query on 6OT

Download SDF File 
Download CCD File 
A, B
3,5-dichlorobenzene-1-sulfonamide
C6 H5 Cl2 N O2 S
AHNOVNYOUPQVRX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.102 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.205 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 82.030α = 90.00
b = 82.330β = 90.00
c = 194.250γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-04-12
    Type: Database references
  • Version 1.2: 2017-07-05
    Type: Database references