5JYJ | pdb_00005jyj

Crystal structure of mouse JUNO

• PDB DOI: https://doi.org/10.2210/pdb5JYJ/pdb

• Classification: CELL ADHESION
• Organism(s): Mus musculus
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 


• Deposited: 2016-05-14 Released: 2017-05-24 
• Deposition Author(s): Kato, K., Nishimasu, H., Morita, J., Ishitani, R., Nureki, O.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.233 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.208 (Depositor), 0.209 (DCC) 
• R-Value Observed: 
  0.209 (Depositor) 

Literature

Crystal structure of the egg IZUMO1 receptor JUNO

Kato, K., Satouh, Y., Nishimasu, H., Kurabayashi, A., Morita, J., Fujihara, Y., Oji, A., Ishitani, R., Ikawa, M., Nureki, O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 24.91 kDa 
• Atom Count: 1,643 
• Modeled Residue Count: 197 
• Deposited Residue Count: 210 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sperm-egg fusion protein Juno	A	210	Mus musculus	Mutation(s): 1  Gene Names: Izumo1r, Folbp3, Folr4, Juno
UniProt & NIH Common Fund Data Resources
Find proteins for Q9EQF4 (Mus musculus) Explore Q9EQF4  Go to UniProtKB:  Q9EQF4
IMPC:  MGI:1929185
Glycosylation
Glycosylation Sites: 1		Go to GlyGen: Q9EQF4-1

Oligosaccharides

Help  

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	B	2		N-Glycosylation
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.233 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.208 (Depositor), 0.209 (DCC) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.396	α = 90
b = 54.449	β = 90
c = 87.145	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-05-24 
Deposition Author(s): Kato, K., Nishimasu, H., Morita, J., Ishitani, R., Nureki, O.

Revision History  

• Version 1.0: 2017-05-24
  Type: Initial release
  
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Structure summary
• Version 2.1: 2024-11-20
  Changes: Data collection, Database references, Structure summary