5JYG

Cryo-EM structure of the MamK filament at 6.5 A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.

Bergeron, J.R.Hutto, R.Ozyamak, E.Hom, N.Hansen, J.Draper, O.Byrne, M.E.Keyhani, S.Komeili, A.Kollman, J.M.

(2017) Protein Sci 26: 93-102

  • DOI: https://doi.org/10.1002/pro.2979
  • Primary Citation of Related Structures:  
    5JYG

  • PubMed Abstract: 

    Magnetotactic bacteria possess cellular compartments called magnetosomes that sense magnetic fields. Alignment of magnetosomes in the bacterial cell is necessary for their function, and this is achieved through anchoring of magnetosomes to filaments composed of the protein MamK. MamK is an actin homolog that polymerizes upon ATP binding. Here, we report the structure of the MamK filament at ∼6.5 Å, obtained by cryo-Electron Microscopy. This structure confirms our previously reported double-stranded, nonstaggered architecture, and reveals the molecular basis for filament formation. While MamK is closest in sequence to the bacterial actin MreB, the longitudinal contacts along each MamK strand most closely resemble those of eukaryotic actin. In contrast, the cross-strand interface, with a surprisingly limited set of contacts, is novel among actin homologs and gives rise to the nonstaggered architecture.


  • Organizational Affiliation

    Department of Plant and Microbial Biology, University of California, Berkeley, California.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Actin-like ATPase
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N
347Paramagnetospirillum magneticum AMB-1Mutation(s): 0 
Gene Names: amb0965
UniProt
Find proteins for Q2W8Q6 (Magnetospirillum magneticum (strain AMB-1 / ATCC 700264))
Explore Q2W8Q6 
Go to UniProtKB:  Q2W8Q6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2W8Q6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download Ideal Coordinates CCD File 
BA [auth G]
DA [auth H]
FA [auth I]
HA [auth J]
JA [auth K]
BA [auth G],
DA [auth H],
FA [auth I],
HA [auth J],
JA [auth K],
LA [auth L],
NA [auth M],
P [auth A],
PA [auth N],
R [auth B],
T [auth C],
V [auth D],
X [auth E],
Z [auth F]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AA [auth G]
CA [auth H]
EA [auth I]
GA [auth J]
IA [auth K]
AA [auth G],
CA [auth H],
EA [auth I],
GA [auth J],
IA [auth K],
KA [auth L],
MA [auth M],
O [auth A],
OA [auth N],
Q [auth B],
S [auth C],
U [auth D],
W [auth E],
Y [auth F]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTRosetta3.5

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-27
    Type: Initial release
  • Version 1.1: 2017-01-11
    Changes: Database references