5JPP | pdb_00005jpp

Structure of limonene epoxide hydrolase mutant - H-2-H5

• PDB DOI: https://doi.org/10.2210/pdb5JPP/pdb

• Classification: HYDROLASE
• Organism(s): Rhodococcus erythropolis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-05-04 Released: 2016-06-15 
• Deposition Author(s): Li, G., Zhang, H., Sun, Z., Liu, X., Reetz, M.T.
• Funding Organization(s): National Natural Science Fundation of China

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.327 (Depositor), 0.330 (DCC) 
• R-Value Work: 
  0.258 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.261 (Depositor) 

Starting Model: experimental

Literature

Multi-Parameter Optimization in Directed Evolution: Engineering Thermostability, Enantioselectivity and Activity of an Epoxide Hydrolase

Li, G., Zhang, H., Sun, Z., Liu, X., Reetz, M.T.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 35 kDa 
• Atom Count: 2,062 
• Modeled Residue Count: 236 
• Deposited Residue Count: 310 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
limonene epoxide hydrolase	A, B	155	Rhodococcus erythropolis	Mutation(s): 0  EC: 3.3.2.8
UniProt
Find proteins for Q9ZAG3 (Rhodococcus erythropolis) Explore Q9ZAG3  Go to UniProtKB:  Q9ZAG3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.327 (Depositor), 0.330 (DCC) 
• R-Value Work:  0.258 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.261 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.402	α = 90
b = 65.402	β = 90
c = 72.36	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-06-15 
Deposition Author(s): Li, G., Zhang, H., Sun, Z., Liu, X., Reetz, M.T.

---

Funding Organization	Location	Grant Number
National Natural Science Fundation of China	China	31370925

Revision History  

• Version 1.0: 2016-06-15
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description