5JNO

Crystal structure of the BD1-NTPR complex from BEND3 and PICH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the BD1-NTPR complex from BEND3 and PICH

Pitchai, G.Mesa, P.Hickson, I.D.Montoya, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BEN domain-containing protein 3
A
112Homo sapiensMutation(s): 0 
Gene Names: BEND3 (KIAA1553)
Find proteins for Q5T5X7 (Homo sapiens)
Go to Gene View: BEND3
Go to UniProtKB:  Q5T5X7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
DNA excision repair protein ERCC-6-like
B
57Homo sapiensMutation(s): 0 
Gene Names: ERCC6L (PICH)
EC: 3.6.4.12
Find proteins for Q2NKX8 (Homo sapiens)
Go to Gene View: ERCC6L
Go to UniProtKB:  Q2NKX8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.222 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 47.280α = 90.00
b = 47.280β = 90.00
c = 431.579γ = 120.00
Software Package:
Software NamePurpose
SHELXDEphasing
XDSdata reduction
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmark14cc0001

Revision History 

  • Version 1.0: 2017-09-13
    Type: Initial release