5JKK

Crystal structure of the negatively supercharged variant Ftn(neg) of human heavy chain ferritin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.143 
  • R-Value Work: 0.124 
  • R-Value Observed: 0.125 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Self-assembly of charged protein containers enables positioning of nanoparticles in a 3-D lattice to form biohybrid materials

Kuenzle, M.Eckert, T.Beck, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Ferritin heavy chain
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
183Homo sapiensMutation(s): 5 
Gene Names: FTH1FTHFTHL6OK/SW-cl.84PIG15
EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens)
Explore P02794 
Go to UniProtKB:  P02794
PHAROS:  P02794
GTEx:  ENSG00000167996 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02794
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FE
Query on FE

Download Ideal Coordinates CCD File 
DA [auth F],
HA [auth G],
I [auth A],
J [auth A],
JA [auth H],
DA [auth F],
HA [auth G],
I [auth A],
J [auth A],
JA [auth H],
N [auth B],
Q [auth C],
U [auth D],
V [auth D],
Z [auth E]
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
M [auth A],
Y [auth D]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
AA [auth E],
BA [auth E],
CA [auth E],
EA [auth F],
FA [auth F],
AA [auth E],
BA [auth E],
CA [auth E],
EA [auth F],
FA [auth F],
GA [auth F],
IA [auth G],
K [auth A],
KA [auth H],
L [auth A],
O [auth B],
P [auth B],
R [auth C],
S [auth C],
T [auth C],
W [auth D],
X [auth D]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.143 
  • R-Value Work: 0.124 
  • R-Value Observed: 0.125 
  • Space Group: P 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 180.98α = 90
b = 180.98β = 90
c = 180.98γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

  • Deposited Date: 2016-04-26 
  • Released Date: 2017-05-10 
  • Deposition Author(s): Kuenzle, M., Beck, T.

Revision History  (Full details and data files)

  • Version 1.0: 2017-05-10
    Type: Initial release