Macromolecule Content

Total Structure Weight: 171.89 kDa
Atom Count: 13086
Modelled Residue Count: 1376
Deposited Residue Count: 1464
Unique protein chains: 1

5JKK

Crystal structure of the negatively supercharged variant Ftn(neg) of human heavy chain ferritin

PDB DOI: 10.2210/pdb5JKK/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-04-26 Released: 2017-05-10
Deposition Author(s): Kuenzle, M., Beck, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.143
R-Value Work: 0.124
R-Value Observed: 0.125

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Self-assembly of charged protein containers enables positioning of nanoparticles in a 3-D lattice to form biohybrid materials

Kuenzle, M., Eckert, T., Beck, T.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin heavy chain	A, B, C, D, E, F, G, H A, B, C, D, E, F, G, H	183	Homo sapiens	Mutation(s): 5 Gene Names: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15 EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens) Explore P02794 Go to UniProtKB: P02794
PHAROS: P02794 GTEx: ENSG00000167996
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02794
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain DA [auth F] SDF format, chain HA [auth G] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain JA [auth H] SDF format, chain N [auth B] SDF format, chain Q [auth C] SDF format, chain U [auth D] SDF format, chain V [auth D] SDF format, chain Z [auth E] MOL2 format, chain DA [auth F] MOL2 format, chain HA [auth G] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain JA [auth H] MOL2 format, chain N [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain U [auth D] MOL2 format, chain V [auth D] MOL2 format, chain Z [auth E]	DA [auth F], HA [auth G], I [auth A], J [auth A], JA [auth H], DA [auth F], HA [auth G], I [auth A], J [auth A], JA [auth H], N [auth B], Q [auth C], U [auth D], V [auth D], Z [auth E]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain Y [auth D] MOL2 format, chain M [auth A] MOL2 format, chain Y [auth D]	M [auth A], Y [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AA [auth E] SDF format, chain BA [auth E] SDF format, chain CA [auth E] SDF format, chain EA [auth F] SDF format, chain FA [auth F] SDF format, chain GA [auth F] SDF format, chain IA [auth G] SDF format, chain K [auth A] SDF format, chain KA [auth H] SDF format, chain L [auth A] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain R [auth C] SDF format, chain S [auth C] SDF format, chain T [auth C] SDF format, chain W [auth D] SDF format, chain X [auth D] MOL2 format, chain AA [auth E] MOL2 format, chain BA [auth E] MOL2 format, chain CA [auth E] MOL2 format, chain EA [auth F] MOL2 format, chain FA [auth F] MOL2 format, chain GA [auth F] MOL2 format, chain IA [auth G] MOL2 format, chain K [auth A] MOL2 format, chain KA [auth H] MOL2 format, chain L [auth A] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain R [auth C] MOL2 format, chain S [auth C] MOL2 format, chain T [auth C] MOL2 format, chain W [auth D] MOL2 format, chain X [auth D]	AA [auth E], BA [auth E], CA [auth E], EA [auth F], FA [auth F], AA [auth E], BA [auth E], CA [auth E], EA [auth F], FA [auth F], GA [auth F], IA [auth G], K [auth A], KA [auth H], L [auth A], O [auth B], P [auth B], R [auth C], S [auth C], T [auth C], W [auth D], X [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.143
R-Value Work: 0.124
R-Value Observed: 0.125
Space Group: P 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 180.98	α = 90
b = 180.98	β = 90
c = 180.98	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2016-04-26
Released Date: 2017-05-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-05-10
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.