Macromolecule Content

Total Structure Weight: 171.89 kDa
Atom Count: 13086
Residue Count: 1376
Unique protein chains: 1

5JKK

Crystal structure of the negatively supercharged variant Ftn(neg) of human heavy chain ferritin

DOI: 10.2210/pdb5JKK/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-04-26 Released: 2017-05-10
Deposition Author(s): Kuenzle, M., Beck, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.143
R-Value Work: 0.124
R-Value Observed: 0.125

wwPDB Validation 3D Report Full Report

Literature

Self-assembly of charged protein containers enables positioning of nanoparticles in a 3-D lattice to form biohybrid materials

Kuenzle, M., Eckert, T., Beck, T.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin heavy chain	A, B, C, D, E, F, G, H	183	Homo sapiens	Mutation(s): 5 Gene Names: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15 EC: 1.16.3.1
Find proteins for P02794 (Homo sapiens) Explore P02794 Go to UniProtKB: P02794
NIH Common Fund Data Resources
PHAROS: P02794 GTEx: ENSG00000167996
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain DA [F] SDF format, chain HA [G] SDF format, chain I [A] SDF format, chain J [A] SDF format, chain JA [H] SDF format, chain N [B] SDF format, chain Q [C] SDF format, chain U [D] SDF format, chain V [D] SDF format, chain Z [E] MOL2 format, chain DA [F] MOL2 format, chain HA [G] MOL2 format, chain I [A] MOL2 format, chain J [A] MOL2 format, chain JA [H] MOL2 format, chain N [B] MOL2 format, chain Q [C] MOL2 format, chain U [D] MOL2 format, chain V [D] MOL2 format, chain Z [E]	A, B, C, D, E, F, G, H	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain M [A] SDF format, chain Y [D] MOL2 format, chain M [A] MOL2 format, chain Y [D]	A, D	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AA [E] SDF format, chain BA [E] SDF format, chain CA [E] SDF format, chain EA [F] SDF format, chain FA [F] SDF format, chain GA [F] SDF format, chain IA [G] SDF format, chain K [A] SDF format, chain KA [H] SDF format, chain L [A] SDF format, chain O [B] SDF format, chain P [B] SDF format, chain R [C] SDF format, chain S [C] SDF format, chain T [C] SDF format, chain W [D] SDF format, chain X [D] MOL2 format, chain AA [E] MOL2 format, chain BA [E] MOL2 format, chain CA [E] MOL2 format, chain EA [F] MOL2 format, chain FA [F] MOL2 format, chain GA [F] MOL2 format, chain IA [G] MOL2 format, chain K [A] MOL2 format, chain KA [H] MOL2 format, chain L [A] MOL2 format, chain O [B] MOL2 format, chain P [B] MOL2 format, chain R [C] MOL2 format, chain S [C] MOL2 format, chain T [C] MOL2 format, chain W [D] MOL2 format, chain X [D]	A, B, C, D, E, F, G, H	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.143
R-Value Work: 0.124
R-Value Observed: 0.125
Space Group: P 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 180.98	α = 90
b = 180.98	β = 90
c = 180.98	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2016-04-26
Released Date: 2017-05-10

Deposition Author(s):

Revision History

Version 1.0: 2017-05-10
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.