5JJW | pdb_00005jjw

Crystal structure of the HAT domain of sart3 in complex with USP15 DUSP-UBL domain

• PDB DOI: https://doi.org/10.2210/pdb5JJW/pdb

• Classification: RNA-binding protein/HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-04-25 Released: 2016-05-04 
• Deposition Author(s): Dong, A., Zhang, Q., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.01 Å
• R-Value Free: 
  0.288 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.234 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.237 (Depositor) 

Literature

Crystal structure of the HAT domain of sart3 in complex with USP15 DUSP-UBL domain

Zhang, Q., Dong, A., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 62.16 kDa 
• Atom Count: 3,406 
• Modeled Residue Count: 445 
• Deposited Residue Count: 524 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Squamous cell carcinoma antigen recognized by T-cells 3	A	300	Homo sapiens	Mutation(s): 0  Gene Names: SART3, KIAA0156, TIP110
UniProt & NIH Common Fund Data Resources
Find proteins for Q15020 (Homo sapiens) Explore Q15020  Go to UniProtKB:  Q15020
PHAROS:  Q15020 GTEx:  ENSG00000075856

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carboxyl-terminal hydrolase 15	B	224	Homo sapiens	Mutation(s): 0  Gene Names: USP15, KIAA0529 EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y4E8 (Homo sapiens) Explore Q9Y4E8  Go to UniProtKB:  Q9Y4E8
PHAROS:  Q9Y4E8 GTEx:  ENSG00000135655

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	C [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
UNX	D [auth B]	UNKNOWN ATOM OR ION X

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.01 Å
• R-Value Free:  0.288 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.234 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.237 (Depositor) 

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.925	α = 90
b = 117.925	β = 90
c = 205.326	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
BUSTER	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-05-04 
Deposition Author(s): Dong, A., Zhang, Q., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2016-05-04
  Type: Initial release
  
• Version 1.1: 2016-07-06
  Changes: Database references
• Version 1.2: 2024-10-23
  Changes: Data collection, Database references, Derived calculations, Structure summary