5JBR

Crystal structure of uncharacterized protein Bcav_2135 from Beutenbergia cavernae

• PDB DOI: https://doi.org/10.2210/pdb5JBR/pdb

• Classification: Structural Genomics, Unknown function
• Organism(s): Beutenbergia cavernae DSM 12333
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2016-04-13 Released: 2016-04-20 
• Deposition Author(s): Chang, C., Cuff, M., Hatzos-Skintges, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.199 
• R-Value Work: 0.153 
• R-Value Observed: 0.155 

Literature

Crystal structure of uncharacterized protein Bcav_2135 from Beutenbergia cavernae

Chang, C., Cuff, M., Hatzos-Skintges, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 33.23 kDa 
• Atom Count: 2,564 
• Modelled Residue Count: 291 
• Deposited Residue Count: 298 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein Bcav_2135	A, B	149	Beutenbergia cavernae DSM 12333	Mutation(s): 1  Gene Names: Bcav_2135
UniProt
Find proteins for C5C6I1 (Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)) Explore C5C6I1  Go to UniProtKB:  C5C6I1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth A], E [auth B], F [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.199 
• R-Value Work: 0.153 
• R-Value Observed: 0.155 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.096	α = 104.04
b = 46.461	β = 102.34
c = 47.82	γ = 117.67

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-04-20 
Deposition Author(s): Chang, C., Cuff, M., Hatzos-Skintges, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2016-04-20
  Type: Initial release