5J90

Structure of Fjoh_4558, a chitin-binding SusD homolog from Flavobacterium johnsoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3932 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.150 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin.

Larsbrink, J.Zhu, Y.Kharade, S.S.Kwiatkowski, K.J.Eijsink, V.G.Koropatkin, N.M.McBride, M.J.Pope, P.B.

(2016) Biotechnol Biofuels 9: 260-260

  • DOI: 10.1186/s13068-016-0674-z
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Chitin is the second most abundant polysaccharide on earth and as such a great target for bioconversion applications. The phylum Bacteroidetes is one of nature's most ubiquitous bacterial lineages and is essential in the global carbon cycle with many ...

    Chitin is the second most abundant polysaccharide on earth and as such a great target for bioconversion applications. The phylum Bacteroidetes is one of nature's most ubiquitous bacterial lineages and is essential in the global carbon cycle with many members being highly efficient degraders of complex carbohydrates. However, despite their specialist reputation in carbohydrate conversion, mechanisms for degrading recalcitrant crystalline polysaccharides such as chitin and cellulose are hitherto unknown.


    Organizational Affiliation

    Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432 ├ůs, Norway ; Wallenberg Wood Science Center, Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RagB/SusD domain protein
A, B
508Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)Mutation(s): 0 
Find proteins for A5FB66 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101))
Go to UniProtKB:  A5FB66
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3932 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.150 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.331α = 90.00
b = 112.137β = 90.00
c = 121.586γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement
PHASERphasing
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-04-08 
  • Released Date: 2017-02-08 
  • Deposition Author(s): Koropatkin, N.M.

Revision History 

  • Version 1.0: 2017-02-08
    Type: Initial release