5J70

The Chd1 DNA-binding domain in complex with 17mer DNA duplex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.956 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Chd1 domains communicate across the DNA gyres of the nucleosome

Nodelman, I.M.Jenkins, K.R.Ren, R.Horvath, K.C.Hauk, G.Bowman, G.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Chromo domain-containing protein 1
A, B
271Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: CHD1
EC: 3.6.4.-
Find proteins for P32657 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: CHD1
Go to UniProtKB:  P32657
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*G)-3')W,Y17synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*C)-3')X,Z17synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.956 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.231 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 86.076α = 90.00
b = 57.099β = 103.90
c = 99.493γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
MOLREPphasing
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM-R01-084192

Revision History 

  • Version 1.0: 2017-06-21
    Type: Initial release
  • Version 1.1: 2017-09-06
    Type: Author supporting evidence