5J6P | pdb_00005j6p

Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe

PDB DOI: https://doi.org/10.2210/pdb5J6P/pdb

Classification: CELL CYCLE
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-04-05 Released: 2017-11-01
Deposition Author(s): Wang, C., Shao, C., Zhang, M., Zhang, X., Zang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.294 (Depositor), 0.330 (DCC)
R-Value Work:
0.225 (Depositor), 0.270 (DCC)
R-Value Observed:
0.228 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe

Shao, C., Wang, C., Zhang, M., Zhang, X., Zang, J.

To be published.

Macromolecule Content

Total Structure Weight: 38.58 kDa
Atom Count: 2,431
Modeled Residue Count: 302
Deposited Residue Count: 330
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kinetochore protein mis18	A [auth B], B [auth A], C	110	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: mis18, SPCC970.12
UniProt
Find proteins for Q9P802 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9P802 Go to UniProtKB: Q9P802
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9P802
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain E [auth A] SDF format, chain D [auth B] MOL2 format, chain F [auth C] MOL2 format, chain E [auth A] MOL2 format, chain D [auth B] mmCIF format, chain F [auth C] mmCIF format, chain E [auth A] mmCIF format, chain D [auth B]	D [auth B], E [auth A], F [auth C]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Focus chain E [auth A] Focus chain F [auth C] Interactions & Density Focus chain D [auth B] Focus chain E [auth A] Focus chain F [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.294 (Depositor), 0.330 (DCC)
R-Value Work: 0.225 (Depositor), 0.270 (DCC)
R-Value Observed: 0.228 (Depositor)

Space Group: P 3₁ 1 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.568	α = 90
b = 120.568	β = 90
c = 73.702	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data processing
SCALA	data scaling
PHENIX	phasing
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-11-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-11-01
Type: Initial release
Version 1.1: 2017-11-08
Changes: Derived calculations
Version 1.2: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.